Wednesday, November 30, 2022

Free Webinar Dec 12, 2022: What's This PDF? The Difference Between Preprints, Epubs, Author Manuscripts, and Version of Record

I thought WHSLA Members might be interested in the following free webinar:


What's This PDF? The Difference Between Preprints, Epubs, Author Manuscripts, and Version of Record

Monday, December 12 , 2022 | 4:00-4:30 PST

You found a PDF online, but you're not sure how official it is. Is a preprint different from "online ahead of print"? Have author manuscripts been peer-reviewed? If there are two different versions of a paper, which one should you cite? Come learn answers to all these tricky questions and more.

 

Presented by:

 

Kelli Hines, MLIS

Western University of Health Sciences 

 

Register here: https://chsu.libcal.com/calendar/scholarlysnippets/articleversions

Please join us for a 30-minute webinar that is designed to help students, faculty, and staff advance their research skills and support their scholarly activities. Registration is open to anyone interested in attending. All sessions are recorded, posted on our YouTube channel, and emailed to all registrants (so sign-up even if you can’t attend live!). 

 

PubMed Update: Proximity Search Now Available in PubMed

  Reprinted from: NLM Tech Bull. 2022 Nov-Dec;(449):e4.  Posted 29 November 2022.

The National Library of Medicine is pleased to announce that proximity search capabilities have been added to PubMed. Users can now search for multiple terms appearing in any order within a specified distance of one another in the [Title] or [Title/Abstract] fields.


How to Build a Proximity Search in PubMed

To create a proximity search in PubMed, enter terms using the following format:

"search terms"[field:~N]

  • Search terms = Two or more words enclosed in double quotes.
  • Field = The search field tag for the [Title] or [Title/Abstract] fields.
  • N = The maximum number of words that may appear between your search terms.

For example, to search PubMed for citations where the terms "hip" and "pain" appear with no more than two words between them in the Title/Abstract search field, try the search:

"hip pain"[Title/Abstract:~2]

Search results may include hip pain, hip-related pain, hip joint pain, hip/groin pain, hip biomechanics and pain, pain after total hip arthroplasty, pain in right hip, and more.

See the PubMed User Guide and view the proximity searching tutorial for more examples and information about proximity searching in PubMed.


Figure 1: PubMed search page for hip pain.


PubMed Proximity FAQs

When should I use proximity search?

Proximity search adds another useful tool to your search toolkit. Searching for the same terms using a variety of techniques (e.g., combining terms with AND, searching for an exact phrase) and comparing the results can help you decide which option(s) to use. Proximity searching can be particularly helpful when searching for concepts that may be represented in multiple ways, or to capture variations of a phrase. For example, you may wish to find information about "healthcare rationing." The proximity search: "rationing healthcare"[tiab:~1] can retrieve citations where this concept appears as "healthcare rationing," "rationing of healthcare," "rationing strategies in healthcare," "rationing limited healthcare," and more.

Is there a limit to the number of terms I can enter in a proximity search?

There is no limit to the number of words you can search together with one proximity operator; however, the more words you include, the narrower your search becomes.

What N value should I use?

What N value to use will depend on your search. Try changing the N value and comparing the results to find what works best for your search. 

A higher N value creates a broader, more comprehensive search; this will typically retrieve more results overall, but some of these results may be less relevant. Using the Boolean operator AND to combine terms may be more appropriate than proximity searching with a large N value.  

A lower N value creates a narrower, more precise search; this will typically retrieve fewer results that are highly relevant but may exclude other relevant results.

If N=0, the quoted terms will appear next to each other--with no other words in between.

Can I combine proximity searches with Booleans and other search terms?

Yes, proximity searches can be combined with other search terms using Boolean operators, for example:

"standard care"[tiab:~2] AND lung cancer

Multiple proximity searches can also be combined using Booleans within one query, for example:

"standard care"[tiab:~2] AND "hip arthroplasty"[tiab:~1]

Can I specify the order my terms appear in a proximity search?

No, the order your search terms appear in results cannot be specified in a proximity search in PubMed.

Can I use proximity search in any field in PubMed?

Proximity search is available only in the [Title] and [Title/Abstract] fields.

Can I use abbreviated search field tags for proximity searching?

Yes, you can use the full search field tags [Title] and [Title/Abstract] or the abbreviated search field tags [ti] and [tiab] interchangeably.

Can I use truncation (*) in a proximity search?

Proximity searching is not compatible with truncation (*) in PubMed. If the double quoted terms in a proximity search include a wildcard (*), the proximity operator will be ignored.

Will PubMed translate the terms in my proximity search with Automatic Term Mapping (ATM)?

Automatic Term Mapping is not applied to proximity searches.

Can I search for an exact phrase in proximity to other terms?

You can combine a phrase search and a proximity search in the same query using Boolean operators; however, it is not possible to specify that an exact phrase appears within a certain distance to other terms.

For example, with the query "acute migraine treatment"[ti:~1] AND "pain management", the terms "acute," "migraine," and "treatment" will appear in the title with no more than one word between them, and the phrase "pain management" can appear anywhere in the record.

My proximity search terms are highlighted in the search results with more than my specified N distance between them--what happened?

The highlighting feature in PubMed does not incorporate query syntax; it uses simple term matching to show words from your query highlighted in bold when those word(s) appear in the search results. Check the full abstract if you are searching in the Title/Abstract field and you don't see the terms from your proximity search highlighted together in the preview "snippet" shown in the summary search results display.

Where can I find more information and help for proximity searching in PubMed?

Please view the Proximity Searching tutorial, and see the PubMed User Guide for more information about proximity searching.

If you have questions or feedback about this new feature, please contact the Help Desk using the Help link available at the bottom of every page in PubMed.


NLM Technical Bulletin
ISSN 2161-2986 (Online) 
Content not copyrighted; freely reproducible.

U.S. National Library of Medicine 8600 Rockville Pike, Bethesda, MD 20894
National Institutes of Health NIH...Turning Discovery into Health® 
Last updated: 29 November 2022.

Tuesday, November 29, 2022

Song of the Cell: Siddhartha Mukherjee's latest book

Looking for something to read over the holidays?  Siddhartha Mukherjee has a new book ...

 


The Song of the Cell: An Exploration of Medicine and the New Human, by Siddhartha Mukherjee

Mukherjee is an eminent oncologist and the Pulitzer Prize–winning author of the best-selling The Emperor of All Maladies and The Gene. His newest book is an expansive study of the cell—the common denominator of all life—and its dizzying range of types and functions. He studies neurons, the cells involved in reproduction, and rampant cancers, and gestures toward a future in which cell engineering could eradicate diseases and transform medicine. Cells are anything but simple structures; rather, they’re sinuous ecosystems, and they come together at a dazzling scale in the body. Blood, for example, is “a cosmos of cells. The restless ones: red blood cells … The healers: tiny platelets … The defenders, the discerners: B cells that make antibody missiles; T cells, door-to-door wanderers that can detect even the whiff of an invader.” Using that twirling prose, he braids history with science; we meet pivotal figures such as the quirky Dutch autodidact Antonie van Leeuwenhoek (who first glimpsed what he called “animalcules” through his microscope) and contemporary Nobel laureates ensconced in their labs, testing gene-editing technologies. Understanding the cell is the key to an age of personalized medicine, Mukherjee argues: Are we ready to embrace it?

Blurb from Seven Books that Will Make You Smarter, The Atlantic.

Find this book on Amazon. 

Tuesday, November 15, 2022

Call for candidates for WHSLA election

From our current WHSLA President, Kathy Koch:

Are you interested in getting more involved with WHSLA in 2023? Looking for some AHIP points? Then nominate yourself for one of these open WHSLA board positions:

Member-at-large (2 positions)

An easy way to get involved with minimal time commitment! A great opportunity for new members or those looking for their first role with a professional association.

President-elect

Serve one year as president-elect, become president the next year, and finish up with 1 year as past-president.

Since we’re such a small group, we really depend on everyone getting involved and taking a turn on the Board. You can see lists of pastboard members on the WHSLA website

If you’re interesting in running or would like more info, email me at kathy dot koch at aah dot org (Annie's note: weirdly written out to foil bots from contacting our esteemed president via email).







Happy 125th anniversary to the Brooklyn Public Library!

As of November 30th, 2022, the Brooklyn Public Library has been serving its community for 125 years!  Today, they revealed that their #1 most circulated book is Where the Wild Things Are by Maurice Sendak.  Check out the BPL's website for the full list of their 125 most checked out books and some cool historical photos like the one below.


Description from BPL website:  Two lines of well-dressed children at right and left before circulation counter at Flatbush Branch Library, a Carnegie library (later remodeled) at 22 Linden Boulevard; two female librarians or clerks assisting children; curved wooden railings in foreground; columns, pillasters, and two levels of book stacks behind circulation counter in background.


Thursday, November 10, 2022

Killer podcast recommendations

Thanks to WHSLA members Jennifer Deal and Dora Davis for sending me two podcast recommendations with similar enough names for a catchy blog post title!

First, Jennifer recommends If Books Could Kill, a new podcast about "the airport bestsellers that captured our hearts and ruined our minds."

Next, Dora recommends This Podcast Will Kill You, an established podcast about "epidemics and weird medical mysteries."  Dora says the season 5 episode on sepsis was particularly good.  Bonus, they have a bunch of fun cocktail recipes (and their non-alcoholic counterparts) on their website.



Monday, November 7, 2022

Not actually an Onion article

When I first saw this headline, I had to double check that I was in fact reading NPR and NOT the Onion.  Nor was I just disoriented by the time change.  The National Park Service really had to tell people NOT to lick toads.  And this isn't even the first hilarious warning to park visitors who don't know how to behave around wildlife this year.